So, I've done some more research on the HT2000W and its corresponding ODUs and found the following:
-I assumed, since HN reps and installation documents routinely call the ODU a "radio" that all of the system modulation and demodulation was being performed outdoors. Apparently that's not the case, and HN is using incorrect terminology.
-It appears that the system modulation is performed in the IDU according to its datasheet: https://www.hughes.com/sites/hughes.com/files/2017-04/HT2000_H56163_HR.pdf
-Since the cable between the IDU and ODU is RG6, obviously Ka band RF (25+ GHz) is not travelling across that cable. The ODU is downconverting to some IF. Hughes won't tell us what that IF is. https://community.hughesnet.com/t5/Tech-Support/Need-to-know-IF-frequency-used-between-antenna-and-modem/td-p/82886
-Modern microwave systems often do have all of the RF components located in the ODU, yet still use coax to connect to the IDU, even though it's just digital data flowing between the two. Especially in residential satellite, installers are used to working with coax, and there would be additional costs and time associated with training them to work with outdoor twisted pair cabling. Also, coax conenctor ends are (in general) easier to waterproof than RJ series connectors are.
So, bottom line, yes losses in the IF cable matter, but a slight impedance mismatch due to dielectric grease in a connector is not going to ruin the system margin. Here's the official doc from HN on IF cable lengths, which is telling: http://www.satelliteguys.us/xen/attachments/fsb_080202_01a_spaceway_cables-pdf.36329/